About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53382PROTEIN CBG26694
Paelopatides53383PROTEIN CBG26694
Paelopatides53384ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides53385KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG
Paelopatides53386SI:CH211-196P9.1-RELATED
Paelopatides53387IP13529P
Paelopatides53388TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides53389ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53390ZINC FINGER AND BTB DOMAIN-CONTAINING
Paelopatides53391PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides53392-
Paelopatides53393DISEASE RESISTANCE PROTEIN RP
Paelopatides53394REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53395BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Paelopatides53396POL PROTEIN
Paelopatides53397MICROSOMAL GLUTATHIONE S-TRANSFERASE 1
Paelopatides53398-
Paelopatides53399TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides53400ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53401ENDONUCLEASE-RELATED
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