About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53402PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
Paelopatides53403ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides53404CST COMPLEX SUBUNIT TEN1
Paelopatides53405UNCHARACTERIZED
Paelopatides53406-
Paelopatides53407-
Paelopatides53408GTP-BINDING
Paelopatides53409TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides53410ENZYMATIC POLYPROTEIN-RELATED
Paelopatides53411SI:DKEY-122A22.2
Paelopatides53412RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN
Paelopatides53413AGAP011099-PA
Paelopatides53414B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides53415NUCLEAR HORMONE RECEPTOR HR3-RELATED
Paelopatides53416REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53417REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides53418-
Paelopatides53419PHOSPHATASE WITH HOMOLOGY TO TENSIN
Paelopatides53420RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Paelopatides53421UNCHARACTERIZED
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