About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53338TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides53339-
Paelopatides53340V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A
Paelopatides53341ATP7, ISOFORM B
Paelopatides53342WD REPEAT-CONTAINING PROTEIN 55
Paelopatides53343CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
Paelopatides53344CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
Paelopatides53345CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
Paelopatides53346UNCHARACTERIZED
Paelopatides53347VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36
Paelopatides53348FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides53349ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides53350PROTEIN EVA-1
Paelopatides53351-
Paelopatides53352TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides53353-
Paelopatides53354TYROSINE-PROTEIN KINASE
Paelopatides53355BARDET-BIEDL SYNDROME PROTEIN 5
Paelopatides53356TRANSPOSON
Paelopatides53357SHUGOSHIN
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