About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53217EXPRESSED PROTEIN
Paelopatides53218PEPTIDASE S8
Paelopatides53219-
Paelopatides53220-
Paelopatides53221TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides53222-
Paelopatides53223RETROTRANSPOSON
Paelopatides53224RETROTRANSPOSON
Paelopatides53225SI:CH211-196P9.1-RELATED
Paelopatides53226-
Paelopatides53227-
Paelopatides53228ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides53229INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides53230-
Paelopatides53231CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53232CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53233CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53234MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B
Paelopatides53235CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides53236TRANSPOSASE, PUTATIVE-RELATED
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