About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides53083STRICTOSIDINE SYNTHASE-RELATED
Paelopatides53084FI04643P-RELATED
Paelopatides53085ENDONUCLEASE
Paelopatides53089PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides53090RETROTRANSPOSON
Paelopatides53091-
Paelopatides53092-
Paelopatides53093NOTCH LIGAND FAMILY MEMBER
Paelopatides53094EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides53095SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides53096TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides53097RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1
Paelopatides53098-
Paelopatides53099TRANSDUCIN BETA-LIKE 3
Paelopatides53100-
Paelopatides53101TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides53102TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides53109OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN
Paelopatides53110PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides53111PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
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