About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52961NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides52962TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides52963-
Paelopatides52964-
Paelopatides5296580 KDA MCM3-ASSOCIATED PROTEIN
Paelopatides52966-
Paelopatides52967PYRROLINE-5-CARBOXYLATE REDUCTASE
Paelopatides52968HYDROXYMETHYLGLUTARYL-COA LYASE
Paelopatides52969CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52970HYDROXYMETHYLGLUTARYL-COA LYASE
Paelopatides52971-
Paelopatides52972POL PROTEIN
Paelopatides52973PERIOSTIN-RELATED
Paelopatides52974SUPEROXIDE DISMUTASE CU-ZN -RELATED
Paelopatides52975-
Paelopatides52976PURPLE ACID PHOSPHATASE
Paelopatides52977PURPLE ACID PHOSPHATASE
Paelopatides52979GLYCOGEN DEBRANCHING ENZYME
Paelopatides52980PROTEIN CBG26694
Paelopatides52981HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
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