About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52855METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY
Paelopatides52856ALPHA-GLUCOSIDASE
Paelopatides52857ALPHA-GLUCOSIDASE
Paelopatides52858SI:CH211-22I13.2
Paelopatides52859-
Paelopatides52860-
Paelopatides52861TRAF-LIKE SUPERFAMILY PROTEIN
Paelopatides52862RIBOPHORIN I
Paelopatides52863RIBOPHORIN I
Paelopatides52864BAX INHIBITOR-RELATED
Paelopatides52865SORTING NEXIN
Paelopatides52866NISCHARIN RELATED
Paelopatides52867REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52868TRNA WYBUTOSINE-SYNTHESIZING PROTEIN 3
Paelopatides52869-
Paelopatides52870BOLA-LIKE PROTEIN 3
Paelopatides52871ACYL-COA SYNTHETASE
Paelopatides52872-
Paelopatides52873AMINO ACID TRANSPORTER
Paelopatides52874MATRIX METALLOPROTEINASE
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