About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52724CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
Paelopatides52725PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Paelopatides52726REPETIN
Paelopatides52727RE52028P
Paelopatides52728PEPTIDASE
Paelopatides52729-
Paelopatides52730-
Paelopatides52731FERMITIN 2-RELATED
Paelopatides52732FERMITIN 2-RELATED
Paelopatides52733CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52734DC12-RELATED
Paelopatides52735-
Paelopatides52736FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides52737-
Paelopatides52738NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides52739NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides52740MATRIX METALLOPROTEINASE
Paelopatides52741ZGC:195170
Paelopatides52742IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1
Paelopatides52743REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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