About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52596ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Paelopatides52597TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides52598PROTEIN EVA-1
Paelopatides52599ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides52600ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides52601PROTEIN CBG26694
Paelopatides52602-
Paelopatides52603FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides52604EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides52605NOTCH LIGAND FAMILY MEMBER
Paelopatides52606UNCHARACTERIZED
Paelopatides52607REVERSE TRANSCRIPTASES
Paelopatides52608EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides52609CRUMBS FAMILY MEMBER
Paelopatides52610CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52611CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52612RAS-RELATED GTP BINDING RAG/GTR YEAST
Paelopatides52613-
Paelopatides52614-
Paelopatides52615MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE
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