About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52536COILED-COIL DOMAIN-CONTAINING PROTEIN 91
Paelopatides52537-
Paelopatides52538SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides52539RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
Paelopatides52540-
Paelopatides52541WD40 REPEAT PROTEIN
Paelopatides52542UNCHARACTERIZED
Paelopatides52543NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT
Paelopatides52544TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides52545-
Paelopatides52546NETRIN RECEPTOR UNC5
Paelopatides52547ENDONUCLEASE
Paelopatides52548RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides52549EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides52550PROTEIN CBG26694
Paelopatides52551PROTEIN CBG26694
Paelopatides52552-
Paelopatides52553FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides52554CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Paelopatides52555DED DOMAIN-CONTAINING PROTEIN
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