About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52406HYPOXIA-INDUCIBLE FACTOR 1 ALPHA
Paelopatides52407-
Paelopatides52408NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides52409-
Paelopatides52410PROTEIN CBG26694
Paelopatides52411ENDONUCLEASE-RELATED
Paelopatides52412SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
Paelopatides52413ARYLSULFATASE
Paelopatides52414ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
Paelopatides52415SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
Paelopatides52416-
Paelopatides52417GPI-ANCHOR TRANSAMIDASE
Paelopatides52418REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52431-
Paelopatides52432-
Paelopatides52433-
Paelopatides52434-
Paelopatides52435REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52436OS05G0424000 PROTEIN-RELATED
Paelopatides52437EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10
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