About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52341LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides52342CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
Paelopatides52343EPSIN/ENT-RELATED
Paelopatides52344PEPTIDASE M20
Paelopatides52345PEPTIDASE M20
Paelopatides52346ACYL-COENZYME A SYNTHETASE
Paelopatides52347RIBONUCLEIC ACID BINDING PROTEIN S1
Paelopatides52348NETRIN RECEPTOR UNC5
Paelopatides52349PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides52350-
Paelopatides52351DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides52352DYNEIN HEAVY CHAIN FAMILY PROTEIN
Paelopatides52353REVERSE TRANSCRIPTASES
Paelopatides52354TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides52355DYNEIN HEAVY CHAIN
Paelopatides52357TROPOMODULIN
Paelopatides52358CULLIN
Paelopatides52359PERSULFIDE DIOXYGENASE ETHE1
Paelopatides52360-
Paelopatides52361PHOSPHOLIPID SCRAMBLASE-RELATED
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