About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52257-
Paelopatides52258ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52259ANKYRIN REPEAT-CONTAINING
Paelopatides52260MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
Paelopatides52261-
Paelopatides52262-
Paelopatides52263-
Paelopatides52264REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52265EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
Paelopatides52266ETS
Paelopatides52267ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52268CYTOCHROME P450 FAMILY 3
Paelopatides52269-
Paelopatides52270FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides52271FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides52272-
Paelopatides52273-
Paelopatides52274ATP-DEPENDENT DNA HELICASE
Paelopatides52275DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides52276DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
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