About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52196ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides52197INTEGRATOR COMPLEX SUBUNIT 3
Paelopatides52198PROTEIN CBG26694
Paelopatides52199-
Paelopatides52200OVOCHYMASE-RELATED
Paelopatides52201PEPTIDASE S8
Paelopatides5220226S PROTEASOME REGULATORY SUBUNIT
Paelopatides5220326S PROTEASOME REGULATORY SUBUNIT
Paelopatides52204PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
Paelopatides52205ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL
Paelopatides52207-
Paelopatides52208ACROSIN-RELATED
Paelopatides52209ACROSIN-RELATED
Paelopatides52210PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides52211PROTEIN CBG23806
Paelopatides52212-
Paelopatides52213PHOSPHOLIPASE A-2-ACTIVATING PROTEIN
Paelopatides52214TRANSCRIPTION INITIATION FACTOR IIB-RELATED
Paelopatides52215TRANSCRIPTION INITIATION FACTOR IIB-RELATED
Paelopatides52216MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE
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