About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52175RHO FAMILY GTPASE
Paelopatides52176NUCLEOPORIN AMO1-LIKE
Paelopatides52177DNA2/NAM7 HELICASE FAMILY
Paelopatides52178-
Paelopatides52179L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides52180SULFOTRANSFERASE SULT
Paelopatides52181SULFOTRANSFERASE SULT
Paelopatides52182-
Paelopatides52183REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52184PROTEIN CBG26694
Paelopatides52185-
Paelopatides52186-
Paelopatides52187-
Paelopatides52188ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides52189-
Paelopatides52190TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
Paelopatides52192MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
Paelopatides52193RIBONUCLEASE P PROTEIN SUBUNIT P20
Paelopatides52194ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides52195-
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