About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52083TORSIN
Paelopatides52113IP01054P
Paelopatides52115DED DOMAIN-CONTAINING PROTEIN
Paelopatides52116ATP-BINDING CASSETTE SUB-FAMILY B
Paelopatides52117GROWTH HORMONE-INDUCIBLE SOLUBLE PROTEIN-RELATED
Paelopatides52118AGAP005574-PA
Paelopatides52119SI:CH211-108C17.2-RELATED-RELATED
Paelopatides52120ENDONUCLEASE-RELATED
Paelopatides52121ZGC:195170
Paelopatides52122PROTEIN B, PUTATIVE-RELATED-RELATED
Paelopatides52123COFILIN-RELATED
Paelopatides52124-
Paelopatides52125-
Paelopatides52126-
Paelopatides52127-
Paelopatides52128-
Paelopatides52129REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides52130-
Paelopatides52131ENDONUCLEASE-RELATED
Paelopatides52132TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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