About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides52063TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4
Paelopatides52064TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11
Paelopatides520654.1 G PROTEIN
Paelopatides52066CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
Paelopatides52067-
Paelopatides52068-
Paelopatides52069FAM98
Paelopatides52070ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52071ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides52072EG:EG0003.4 PROTEIN-RELATED
Paelopatides52073EG:EG0003.4 PROTEIN-RELATED
Paelopatides52074-
Paelopatides52075-
Paelopatides52076MITOCHONDRIAL RIBOSOMAL PROTEIN L24
Paelopatides52077PYGOPUS
Paelopatides52078AMMONIUM TRANSPORTER
Paelopatides52079ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
Paelopatides52080HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides52081-
Paelopatides52082ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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