About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51942-
Paelopatides51943ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51944OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
Paelopatides51945GH3 DOMAIN-CONTAINING PROTEIN
Paelopatides51946ENDONUCLEASE-RELATED
Paelopatides51947TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides51948PARANEOPLASTIC ANTIGEN
Paelopatides51949DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides51950-
Paelopatides51951-
Paelopatides51952NGFI-A BINDING PROTEIN
Paelopatides5195350S/60S RIBOSOMAL PROTEIN L14/L23
Paelopatides51954PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51955PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51956PROTEIN NCBP2AS2
Paelopatides51957LIPOCALIN-1 INTERACTING MEMBRANE RECEPTOR LIMR
Paelopatides51958GLUCOSE-6-PHOSPHATASE
Paelopatides51959UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
Paelopatides51960-
Paelopatides51961MELANOCYTE PROTEIN PMEL 17-RELATED
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