About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51856REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51857REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51860-
Paelopatides51861-
Paelopatides51862NXPE FAMILY MEMBER
Paelopatides51863FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51864-
Paelopatides51865CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides51866POL PROTEIN
Paelopatides51867CYSTEINE PROTEASE FAMILY C1-RELATED
Paelopatides51868TOLL-LIKE RECEPTOR
Paelopatides51869SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides51870TOLL-LIKE RECEPTOR
Paelopatides51871L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides51872-
Paelopatides51873LEUCOKININ RECEPTOR-RELATED
Paelopatides51874CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51876BUCENTAUR RELATED
Paelopatides51877SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4
Paelopatides51878RETROTRANSPOSON
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