About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51812ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51813-
Paelopatides51814-
Paelopatides51815-
Paelopatides51816ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51817-
Paelopatides51818SERINE/THREONINE-PROTEIN KINASE
Paelopatides51819NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides51820ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51821CATION CHANNEL SPERM-ASSOCIATED PROTEIN 3
Paelopatides51822ENDONUCLEASE-RELATED
Paelopatides51823POL PROTEIN
Paelopatides51824UNCHARACTERIZED
Paelopatides51825PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P
Paelopatides51826LEUCOKININ RECEPTOR-RELATED
Paelopatides51827NEUROPEPTIDE S RECEPTOR
Paelopatides51828GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5
Paelopatides51829LONG-CHAIN-FATTY-ACID--COA LIGASE
Paelopatides51830-
Paelopatides51831PDZ AND LIM DOMAIN PROTEIN ZASP
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