About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51832-
Paelopatides51833SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides51834SYNAPTIC ADHESION-LIKE MOLECULE SALM
Paelopatides51835REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51836PROTEIN MMS22-LIKE
Paelopatides51837DRAB5-RELATED
Paelopatides51838TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT
Paelopatides51839CHAPERONIN
Paelopatides51840GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides51842UNCHARACTERIZED
Paelopatides51843-
Paelopatides51844LD33695P
Paelopatides51845INTEGRIN BETA SUBUNIT
Paelopatides51846-
Paelopatides51847EPM2A-INTERACTING PROTEIN 1
Paelopatides51848CYTOCHROME B561-RELATED
Paelopatides51849DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides51852ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides51853HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides51854PHD-TYPE DOMAIN-CONTAINING PROTEIN
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