About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51708-
Paelopatides51709-
Paelopatides51710-
Paelopatides51711DYNEIN ASSEMBLY FACTOR 4, AXONEMAL
Paelopatides51712BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides51713ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Paelopatides51714ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Paelopatides51715-
Paelopatides51716-
Paelopatides51721-
Paelopatides51722ENDONUCLEASE-RELATED
Paelopatides51723ENZYMATIC POLYPROTEIN-RELATED
Paelopatides51724UDP/ADP-SUGAR PYROPHOSPHATASE
Paelopatides51725MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED
Paelopatides51726-
Paelopatides51727HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides51728-
Paelopatides51729-
Paelopatides51730SULFATASE MODIFYING FACTOR 1, 2
Paelopatides51731TRANSPOSON
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