About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51578NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides51579GAG-RELATED PROTEIN
Paelopatides51580PROLYL 4-HYDROXYLASE ALPHA SUBUNIT
Paelopatides51581NUCLEAR PROTEIN LOCALIZATION 4
Paelopatides51582HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides51583-
Paelopatides51584TOLL-LIKE RECEPTOR
Paelopatides51585TOLL-LIKE RECEPTOR
Paelopatides51586-
Paelopatides51587NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides51588GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides51589-
Paelopatides51590-
Paelopatides51591-
Paelopatides51592-
Paelopatides51593ZGC:195170
Paelopatides51598-
Paelopatides51599-
Paelopatides51600PARANEOPLASTIC ANTIGEN
Paelopatides51601POL PROTEIN
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