About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51538DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
Paelopatides51539YIPPEE DOMAIN-CONTAINING PROTEIN
Paelopatides51540ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides51541CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57
Paelopatides51542REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51543REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51544FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51545AQUAPORIN OR AQUAGLYCEROPORIN RELATED
Paelopatides51546CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51547SERINE PROTEASE INHIBITOR
Paelopatides51548PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51549UNCHARACTERIZED
Paelopatides51550REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51551HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE
Paelopatides51552ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Paelopatides51553TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides51554-
Paelopatides51555-
Paelopatides51556-
Paelopatides51557-
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