About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51412HISTONE DEACETYLASE HDAC1-RELATED
Paelopatides51413RETINOL DEHYDROGENASE-RELATED
Paelopatides51414-
Paelopatides51415PROTEIN CBG26694
Paelopatides51416PROTEIN CBG26694
Paelopatides51417FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51418REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51419UBIQUITIN LIGASE PROTEIN CHFR
Paelopatides51420-
Paelopatides51421ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51422N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Paelopatides51423SULFOTRANSFERASE SULT
Paelopatides51424-
Paelopatides51425-
Paelopatides51426ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides51427ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
Paelopatides51428SI:CH211-196P9.1-RELATED
Paelopatides51429PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
Paelopatides51430PROTEIN PET100 HOMOLOG, MITOCHONDRIAL
Paelopatides51431REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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