About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51331-
Paelopatides51332SERINE/THREONINE-PROTEIN KINASE NEK
Paelopatides51333-
Paelopatides51334DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT
Paelopatides51335DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT
Paelopatides51336-
Paelopatides51337PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides51338RETROTRANSPOSON
Paelopatides51339TSEC-2-RELATED
Paelopatides51340CYTOCHROME C OXIDASE POLYPEPTIDE 7A
Paelopatides51341CYTOCHROME C OXIDASE POLYPEPTIDE 7A
Paelopatides51342ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1
Paelopatides51343MENIN
Paelopatides51344MENIN
Paelopatides51345E3 UBIQUITIN-PROTEIN LIGASE RNF8
Paelopatides51346CLE
Paelopatides51347-
Paelopatides51348-
Paelopatides51349-
Paelopatides51350BCL-2 RELATED
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