About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51351-
Paelopatides51352GLUTAMATE--TRNA LIGASE
Paelopatides51353UNCHARACTERIZED
Paelopatides51354-
Paelopatides51355ZINC FINGER PROTEIN
Paelopatides51356FI24210P1
Paelopatides51357REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51358GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides51359REVERSE TRANSCRIPTASES
Paelopatides51360MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides51361REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51362MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED
Paelopatides51363ROTATIN
Paelopatides51364ROTATIN
Paelopatides51365CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
Paelopatides51366REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51367BETA-LACTAMASE-RELATED
Paelopatides51368REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51369BETA-LACTAMASE-RELATED
Paelopatides51370NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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