About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51371ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides51372EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides51373-
Paelopatides51374-
Paelopatides51375PROTEIN LIN-28
Paelopatides51376SH3 MULTIPLE DOMAIN
Paelopatides51377PHYTANOYL-COA ALPHA-HYDROXYLASE
Paelopatides51378-
Paelopatides51379-
Paelopatides51381-
Paelopatides51382REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51383PROTEIN CBG26694
Paelopatides51384-
Paelopatides51385SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED
Paelopatides51386UNCHARACTERIZED
Paelopatides51387HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides51388DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Paelopatides51389PROTEIN CBG26694
Paelopatides51390DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
Paelopatides51391ARMADILLO-LIKE HELICAL DOMAIN-CONTAINING PROTEIN 2
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