About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51311-
Paelopatides51312-
Paelopatides51313ZINC FINGER PROTEIN 200
Paelopatides51314DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
Paelopatides51315DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED
Paelopatides51316-
Paelopatides51317-
Paelopatides51318ADULT RETINA PROTEIN
Paelopatides51319ADENOSINE/GUANOSINE DIPHOSPHATASE
Paelopatides51320BNIP1-RELATED
Paelopatides51321ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides51322ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides51323LYSYL OXIDASE-LIKE-RELATED
Paelopatides51324LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN
Paelopatides51325PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51326SET DOMAIN PROTEINS
Paelopatides51327SET DOMAIN PROTEINS
Paelopatides51328MONOCARBOXYLATE TRANSPORTER
Paelopatides51329-
Paelopatides51330-
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