About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51208PR DOMAIN ZINC FINGER PROTEIN
Paelopatides51209-
Paelopatides51210N-LYSINE METHYLTRANSFERASE KMT5A
Paelopatides51211SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51212SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51213ATP-DEPENDENT RNA HELICASE RHLE-RELATED
Paelopatides51215MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
Paelopatides51216PROTEIN CBG10425
Paelopatides51217-
Paelopatides51218ZINC FINGER PROTEIN
Paelopatides51219RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Paelopatides51220RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Paelopatides51221MALONYL-COA ACP TRANSACYLASE, ACP-BINDING
Paelopatides51222EXPRESSED PROTEIN
Paelopatides51223-
Paelopatides51224-
Paelopatides51225-
Paelopatides51226REGULATOR OF CHROMOSOME CONDENSATION
Paelopatides51228ALSIN HOMOLOG
Paelopatides51229VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25
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