About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51148POL PROTEIN
Paelopatides51149FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51150PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51151GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Paelopatides51152-
Paelopatides51153-
Paelopatides51154PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51155SCC1 / RAD21 FAMILY MEMBER
Paelopatides51156SCC1 / RAD21 FAMILY MEMBER
Paelopatides51157-
Paelopatides51158TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
Paelopatides51159-
Paelopatides51160-
Paelopatides51161REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51162TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides51163PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51164-
Paelopatides51165-
Paelopatides51166WSCD FAMILY MEMBER CG9164
Paelopatides51167PROTEIN CBG26694
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