About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51127POL PROTEIN
Paelopatides51128REVERSE TRANSCRIPTASES
Paelopatides51129-
Paelopatides51130PEPTIDASE S8
Paelopatides51131CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
Paelopatides51132-
Paelopatides51133NFATC2-INTERACTING PROTEIN
Paelopatides51134REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51135PHOSPHATIDYLINOSITOL SYNTHASE
Paelopatides51136-
Paelopatides51137INTERFERON-INDUCED PROTEIN WITH TETRATRICOPEPTIDE REPEATS
Paelopatides51138-
Paelopatides51139REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51140COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Paelopatides51141PARANEOPLASTIC ANTIGEN
Paelopatides51142PROTEIN CBG26694
Paelopatides51143-
Paelopatides51144-
Paelopatides51145F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51147-
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