About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51007ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides51008-
Paelopatides51009SERINE/THREONINE-PROTEIN KINASE TAO
Paelopatides51010PROTEIN CBG26694
Paelopatides51011-
Paelopatides51012GOLGIN
Paelopatides51013GOLGIN
Paelopatides51014GOLGIN
Paelopatides51015U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN
Paelopatides51016-
Paelopatides51017RIBONUCLEASE P SUBUNIT P25
Paelopatides51018ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides51019-
Paelopatides51020ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides51021L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides51022ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides51023REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51024-
Paelopatides51025INTEGRIN BETA SUBUNIT
Paelopatides51026ENZYMATIC POLYPROTEIN-RELATED
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