About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50987SH3 DOMAIN-CONTAINING
Paelopatides50988-
Paelopatides50989UBIQUITIN-LIKE PROTEIN 5
Paelopatides50990ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1
Paelopatides50991ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides50992PROTEIN CBG26694
Paelopatides50993-
Paelopatides50994IMPORTIN BETA
Paelopatides50995UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
Paelopatides50996-
Paelopatides50997-
Paelopatides50998AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Paelopatides50999AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Paelopatides51000MUCIN-17
Paelopatides51001ZINC FINGER PROTEIN DZIP1
Paelopatides51002-
Paelopatides51003APOPTOSIS-INDUCING FACTOR 1
Paelopatides51004APOPTOSIS-INDUCING FACTOR 1
Paelopatides51005MOTILE SPERM DOMAIN-CONTAINING PROTEIN 1
Paelopatides51006RAS-RELATED PROTEIN RAB
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