About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50962-
Paelopatides50963-
Paelopatides50964REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50965-
Paelopatides50966-
Paelopatides50967-
Paelopatides50968-
Paelopatides50974-
Paelopatides50975REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50976INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides50977SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides50978SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides50979RETROTRANSPOSON
Paelopatides50980RETROTRANSPOSON
Paelopatides50981-
Paelopatides50982CATION CHANNEL SPERM-ASSOCIATED PROTEIN SUBUNIT GAMMA
Paelopatides50983IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides50984PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides50985ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50986SYNAPTIC ADHESION-LIKE MOLECULE SALM
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