About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51027PROTEIN CBG26694
Paelopatides51028O-METHYLTRANSFERASE-RELATED
Paelopatides51029F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51030F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51031PROTEIN CBG10425
Paelopatides51032-
Paelopatides51033LEPTIN RECEPTOR-RELATED
Paelopatides51034BUCENTAUR RELATED
Paelopatides51035METALLOENDOPEPTIDASE OMA1
Paelopatides51036TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides51037REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51038-
Paelopatides51039CALCIUM-TRANSPORTING ATPASE
Paelopatides51040-
Paelopatides51041RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5
Paelopatides51042PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51043REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51044LATROPHILIN RECEPTOR-LIKE PROTEIN A
Paelopatides51045SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides51046REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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