About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50920CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides50921CARBOHYDRATE SULFOTRANSFERASE 15
Paelopatides50922GLYCOGENIN SUBFAMILY MEMBER
Paelopatides50923FOLATE TRANSPORTER
Paelopatides50924FOLATE TRANSPORTER
Paelopatides50925FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides50926-
Paelopatides50927ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides50929BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides50930POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides50931BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides50932-
Paelopatides50933BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
Paelopatides50934AGAP001623-PA
Paelopatides50935FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides50937RETROTRANSPOSON
Paelopatides50938RETROTRANSPOSON
Paelopatides50939PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides50940-
Paelopatides50941-
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