About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50819PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1
Paelopatides50820-
Paelopatides50821PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides50822CALMODULIN-LYSINE N-METHYLTRANSFERASE
Paelopatides50823-
Paelopatides50824-
Paelopatides50825ZGC:195170
Paelopatides50826TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides50827HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50828REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50829TNF RECEPTOR ASSOCIATED FACTOR
Paelopatides50830REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50831BUCENTAUR RELATED
Paelopatides50832RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides50833CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50834SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50835SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides50836-
Paelopatides50837FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides50838NGD5/OSM-6/IFT52
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