About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides50879FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides5088060S RIBOSOMAL PROTEIN L4
Paelopatides50881SI:CH211-108C17.2-RELATED-RELATED
Paelopatides50882PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides50883RETROTRANSPOSON
Paelopatides50884RETROTRANSPOSON
Paelopatides50885PROTEIN CBG26694
Paelopatides50886PROTEIN CBG26694
Paelopatides50887POL PROTEIN
Paelopatides50888-
Paelopatides50889REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides50890B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides50891ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50892POL PROTEIN
Paelopatides50893ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50894ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50895ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50896POL PROTEIN
Paelopatides50897ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides50898EXPRESSED PROTEIN
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