About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51188-
Paelopatides51189FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51190FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51191ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51192-
Paelopatides51193UNCHARACTERIZED
Paelopatides51194-
Paelopatides51195-
Paelopatides51196L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides51197CYTOKINE RECEPTOR
Paelopatides51198CYTOKINE RECEPTOR
Paelopatides51199-
Paelopatides51200ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51201-
Paelopatides5120260S RIBOSOMAL PROTEIN L3-RELATED
Paelopatides51203NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT
Paelopatides51204LP04239P
Paelopatides51205TEKTIN
Paelopatides51206RNA AND EXPORT FACTOR BINDING PROTEIN
Paelopatides51207RHO GDP-DISSOCIATION INHIBITOR
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