About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51230REVERSE TRANSCRIPTASES
Paelopatides51231REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51232DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5
Paelopatides51233NITRATE, FORMATE, IRON DEHYDROGENASE
Paelopatides51234CYTOCHROME P450 508A4-RELATED
Paelopatides51235ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51236-
Paelopatides51237SI:CH211-196P9.1-RELATED
Paelopatides51238NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides51239ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides51240DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides51241-
Paelopatides51242DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides51243PROTEIN CBG26694
Paelopatides51244-
Paelopatides51245FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51246-
Paelopatides51247-
Paelopatides51248REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51249REVERSE TRANSCRIPTASES
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