About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51270TRANSMEMBRANE PROTEIN 179
Paelopatides51271REVERSE TRANSCRIPTASES
Paelopatides51272PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
Paelopatides51273PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
Paelopatides51274PRE-MRNA PROCESSING PROTEIN PRP39-RELATED
Paelopatides51275-
Paelopatides51276WD REPEAT PROTEIN 26-RELATED
Paelopatides51278LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN
Paelopatides51279-
Paelopatides51280C1ORF73 PROTEIN
Paelopatides51281REGULATOR COMPLEX PROTEIN LAMTOR3
Paelopatides51282METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
Paelopatides51283METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
Paelopatides51284LYSOPHOSPHOLIPASE-RELATED
Paelopatides51285-
Paelopatides51286PROTEIN CBG26694
Paelopatides51287IMIDAZOLONEPROPIONASE
Paelopatides51288IMIDAZOLONEPROPIONASE
Paelopatides51289ENZYMATIC POLYPROTEIN-RELATED
Paelopatides51290TRANSPOSON TY3-I GAG-POL POLYPROTEIN
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