About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51498PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51499MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides51500ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN
Paelopatides51501CARBONIC ANHYDRASE
Paelopatides51502-
Paelopatides51503-
Paelopatides51504REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51505ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51506ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51507PROTEIN CBG26694
Paelopatides51508ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides51509REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51510HUNTINGTON DISEASE PROTEIN
Paelopatides51511EPM2A-INTERACTING PROTEIN 1
Paelopatides5151239S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL
Paelopatides51513MALARIA ANTIGEN-RELATED
Paelopatides51514PROTEIN-TYROSINE SULFOTRANSFERASE 2
Paelopatides51515REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51516MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
Paelopatides51517-
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