About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51558-
Paelopatides51559TUBULIN
Paelopatides51560-
Paelopatides51561UNCHARACTERIZED
Paelopatides51562UNCHARACTERIZED
Paelopatides51563-
Paelopatides51564ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51565-
Paelopatides51566FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51567-
Paelopatides51568BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides51569BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides51570TRANSPOSON
Paelopatides51571-
Paelopatides51572RETROTRANSPOSON
Paelopatides51573ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides51574-
Paelopatides51575AP ENDONUCLEASE
Paelopatides51576NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides51577NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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