About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51625-
Paelopatides51626CHROMOSOME 1 OPEN READING FRAME 112
Paelopatides51627CHROMOSOME 1 OPEN READING FRAME 112
Paelopatides51628PROTEIN CBG26694
Paelopatides51629PROTEIN CBG26694
Paelopatides51631ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51632CYTOCHROME P450 508A4-RELATED
Paelopatides51633-
Paelopatides51634MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides51635-
Paelopatides51636PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51637-
Paelopatides51638ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides51639ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
Paelopatides51640GAMMA GLUTAMYL TRANSPEPTIDASE
Paelopatides51641GEO13361P1-RELATED
Paelopatides51642SERUM RESPONSE FACTOR HOMOLOG
Paelopatides51643NAD(P)H-HYDRATE EPIMERASE
Paelopatides51644-
Paelopatides51645-
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