About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51666MULTICOPPER OXIDASE-RELATED
Paelopatides51667-
Paelopatides51668ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51669NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides51670REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51671ALPHA-2,8-SIALYLTRANSFERASE
Paelopatides51672SERYL-TRNA SYNTHETASE
Paelopatides51673REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1
Paelopatides51674UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
Paelopatides51675UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
Paelopatides51676-
Paelopatides51677PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51678-
Paelopatides51679-
Paelopatides51680UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
Paelopatides51681-
Paelopatides51682CYSTEINE AND HISTIDINE-RICH PROTEIN 1
Paelopatides51683TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
Paelopatides51684-
Paelopatides51685SI:CH211-108C17.2-RELATED-RELATED
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