About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51604SI:CH211-196P9.1-RELATED
Paelopatides51605SI:CH211-196P9.1-RELATED
Paelopatides51606PROTEIN CBG26694
Paelopatides51607TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides51608ENDONUCLEASE-RELATED
Paelopatides51609UNCHARACTERIZED
Paelopatides51610CBL
Paelopatides51612A1 CISTRON SPLICING FACTOR AAR2-RELATED
Paelopatides51613ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides51614-
Paelopatides51615-
Paelopatides51616-
Paelopatides51617-
Paelopatides51618REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51619APPLE DOMAIN-CONTAINING PROTEIN
Paelopatides51620N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides51621N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
Paelopatides51622-
Paelopatides51623INTER-ALPHA-TRYPSIN INHIBITOR HEAVY CHAIN FAMILY MEMBER
Paelopatides51624LEUCINE-RICH REPEAT-CONTAINING
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