About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51900F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51901-
Paelopatides51902NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides51903FI04643P-RELATED
Paelopatides51904NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides51905TUBULIN POLYGLUTAMYLASE
Paelopatides51906CS DOMAIN-CONTAINING PROTEIN
Paelopatides51907DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1
Paelopatides51908PROTEIN CBG26694
Paelopatides51909-
Paelopatides51910-
Paelopatides51911-
Paelopatides51912-
Paelopatides51913HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides51914SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides51915CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2
Paelopatides51916BETA-HEXOSAMINIDASE
Paelopatides51917TRANSMEMBRANE PROTEIN
Paelopatides51918-
Paelopatides51919TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3
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