About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51920SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER
Paelopatides51921PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1
Paelopatides51922PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides51923-
Paelopatides51924ACYL-COA SYNTHETASE
Paelopatides51925FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides51926REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51927FATTY ACID ACYL TRANSFERASE-RELATED
Paelopatides51928EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
Paelopatides51929COMM DOMAIN-CONTAINING PROTEIN 9
Paelopatides51930REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides51931INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides51932INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
Paelopatides51933REVERSE TRANSCRIPTASES
Paelopatides51936-
Paelopatides51937TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides51938ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides51939ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides5194037S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL
Paelopatides51941DNA POLYMERASE
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