About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides51879PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides51880-
Paelopatides51882GLYCOSYLTRANSFERASE
Paelopatides51883MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides51884AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
Paelopatides51885RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides51886MYOTUBULARIN-RELATED
Paelopatides51887STG PROTEIN
Paelopatides51888-
Paelopatides51889ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides51890VACUOLAR PROTEIN SORTING 26 RELATED
Paelopatides51891TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides51892DEATH DOMAIN-CONTAINING PROTEIN CRADD
Paelopatides51893-
Paelopatides51894-
Paelopatides51895C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides51896PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides51897FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides51898-
Paelopatides51899SLR5058 PROTEIN
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